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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D09G1579 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | GRAS | ||||||||
| Protein Properties | Length: 527aa MW: 59334.8 Da PI: 4.4695 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 137.6 | 1.3e-42 | 159 | 523 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
+lL + ea ++++ ela+ +L + e asp g++ +R+a+ + ++ ++++++ l ++e+ s++ aa+++f++v+P+ +f+h++aN+
Gh_D09G1579 159 HLLKAYGEATEKNQSELAEVILRCVGEKASPVGETWERIAFNL----SQDIQHQSDYL-----MQES----SKNFEAAFRVFYQVFPYWRFAHFAANS 243
7888889999******************************975....55566522222.....2233....56788999******************* PP
GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
aIlea+ ++ +++Hi+Df+i++GlQWp+ ++aLa + s+R+T + +e++ s + + t ++L + A+++g+++e + + ++dl ++eL
Gh_D09G1579 244 AILEAMPNDaDTLHIVDFNIGEGLQWPPVIEALAWKH---KSMRLTSIRWEEEDsahSPWRFKGTMRQLCNHAKSFGLKLEVEEM---GIHDL-VNEL 334
******999899**********************985...56******99888877788899********************997...88888.8999 PP
GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqe.adh..nsesFlerflealeyysalfdsleakl 275
++k+ gE la n+++ + + + ++ + e+L++ k++ + v+++ + + ++ + + F + f l +y a+++s+e+++
Gh_D09G1579 335 KMKKrggaGEWLAFNCMVGMGKGK--RRKIVN---EFLNVAKEVLASsgnyfardrgVITFGDGDaCEKlkGCSGFGTFFNGQLMHYQAVLESMESNF 427
99999999**********999886..444444...7888888875533333333455999999995444467789**********************9 PP
GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvs 369
+++ ++r+ +E ++g++i+ ++ + +++ + ++ +++s++ ++ak ++r+ + ++v + ++l l W++++Lv
Gh_D09G1579 428 AKHLvQARMAMECLFVGPNICGQAWLQKWKEINEIC---DFDA---GTALEGLRVSSERLMEAKEIVRERD-TLFEVSiggVSGNELALEWRGNTLVR 518
98888***************8765555555222222...2222...234567889**************99.5588887778899************* PP
GRAS 370 vSaWr 374
vS+Wr
Gh_D09G1579 519 VSSWR 523
****8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 22.537 | 131 | 527 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 4.7E-40 | 159 | 523 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 527 aa Download sequence Send to blast |
MMQSDNFPPS SWPFESFLNS SIDQFEVQPY GLNMSENFDG CEFSSSFNTR EDSPEISHFS 60 TMFSGEIFPC NDHLQEFLVP LEGLESMLTD GIEDLYDCLD EGEDSFGSMM PLSSQSQDVC 120 SPSASIRSSE ASADMTSTQS SLTLPGDSME IDNQLSLFHL LKAYGEATEK NQSELAEVIL 180 RCVGEKASPV GETWERIAFN LSQDIQHQSD YLMQESSKNF EAAFRVFYQV FPYWRFAHFA 240 ANSAILEAMP NDADTLHIVD FNIGEGLQWP PVIEALAWKH KSMRLTSIRW EEEDSAHSPW 300 RFKGTMRQLC NHAKSFGLKL EVEEMGIHDL VNELKMKKRG GAGEWLAFNC MVGMGKGKRR 360 KIVNEFLNVA KEVLASSGNY FARDRGVITF GDGDACEKLK GCSGFGTFFN GQLMHYQAVL 420 ESMESNFAKH LVQARMAMEC LFVGPNICGQ AWLQKWKEIN EICDFDAGTA LEGLRVSSER 480 LMEAKEIVRE RDTLFEVSIG GVSGNELALE WRGNTLVRVS SWRNTQL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 8e-15 | 165 | 522 | 26 | 377 | Protein SCARECROW |
| 5b3h_D | 8e-15 | 165 | 522 | 26 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016673055.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
| TrEMBL | A0A1U8I494 | 0.0 | A0A1U8I494_GOSHI; nodulation-signaling pathway 2 protein-like | ||||
| TrEMBL | A0A2P5QDA4 | 0.0 | A0A2P5QDA4_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.006G184400.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM14344 | 10 | 21 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66770.1 | 2e-18 | GRAS family protein | ||||




