PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1579
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 527aa    MW: 59334.8 Da    PI: 4.4695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1579genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS137.61.3e-421595233374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea ++++ ela+ +L  + e asp g++ +R+a+ +    ++ ++++++ l     ++e+    s++  aa+++f++v+P+ +f+h++aN+
  Gh_D09G1579 159 HLLKAYGEATEKNQSELAEVILRCVGEKASPVGETWERIAFNL----SQDIQHQSDYL-----MQES----SKNFEAAFRVFYQVFPYWRFAHFAANS 243
                  7888889999******************************975....55566522222.....2233....56788999******************* PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  aIlea+ ++ +++Hi+Df+i++GlQWp+ ++aLa +     s+R+T +  +e++   s  + + t ++L + A+++g+++e + +    ++dl ++eL
  Gh_D09G1579 244 AILEAMPNDaDTLHIVDFNIGEGLQWPPVIEALAWKH---KSMRLTSIRWEEEDsahSPWRFKGTMRQLCNHAKSFGLKLEVEEM---GIHDL-VNEL 334
                  ******999899**********************985...56******99888877788899********************997...88888.8999 PP

         GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqe.adh..nsesFlerflealeyysalfdsleakl 275
                  ++k+    gE la n+++ + +    + ++ +   e+L++ k++ +           v+++ + + ++   + + F + f   l +y a+++s+e+++
  Gh_D09G1579 335 KMKKrggaGEWLAFNCMVGMGKGK--RRKIVN---EFLNVAKEVLASsgnyfardrgVITFGDGDaCEKlkGCSGFGTFFNGQLMHYQAVLESMESNF 427
                  99999999**********999886..444444...7888888875533333333455999999995444467789**********************9 PP

         GRAS 276 pres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvs 369
                  +++  ++r+ +E  ++g++i+     ++ + +++        +      ++ +++s++  ++ak ++r+ +   ++v     + ++l l W++++Lv 
  Gh_D09G1579 428 AKHLvQARMAMECLFVGPNICGQAWLQKWKEINEIC---DFDA---GTALEGLRVSSERLMEAKEIVRERD-TLFEVSiggVSGNELALEWRGNTLVR 518
                  98888***************8765555555222222...2222...234567889**************99.5588887778899************* PP

         GRAS 370 vSaWr 374
                  vS+Wr
  Gh_D09G1579 519 VSSWR 523
                  ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.537131527IPR005202Transcription factor GRAS
PfamPF035144.7E-40159523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MMQSDNFPPS SWPFESFLNS SIDQFEVQPY GLNMSENFDG CEFSSSFNTR EDSPEISHFS  60
TMFSGEIFPC NDHLQEFLVP LEGLESMLTD GIEDLYDCLD EGEDSFGSMM PLSSQSQDVC  120
SPSASIRSSE ASADMTSTQS SLTLPGDSME IDNQLSLFHL LKAYGEATEK NQSELAEVIL  180
RCVGEKASPV GETWERIAFN LSQDIQHQSD YLMQESSKNF EAAFRVFYQV FPYWRFAHFA  240
ANSAILEAMP NDADTLHIVD FNIGEGLQWP PVIEALAWKH KSMRLTSIRW EEEDSAHSPW  300
RFKGTMRQLC NHAKSFGLKL EVEEMGIHDL VNELKMKKRG GAGEWLAFNC MVGMGKGKRR  360
KIVNEFLNVA KEVLASSGNY FARDRGVITF GDGDACEKLK GCSGFGTFFN GQLMHYQAVL  420
ESMESNFAKH LVQARMAMEC LFVGPNICGQ AWLQKWKEIN EICDFDAGTA LEGLRVSSER  480
LMEAKEIVRE RDTLFEVSIG GVSGNELALE WRGNTLVRVS SWRNTQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-1516552226377Protein SCARECROW
5b3h_D8e-1516552226377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673055.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U8I4940.0A0A1U8I494_GOSHI; nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P5QDA40.0A0A2P5QDA4_GOSBA; Uncharacterized protein
STRINGGorai.006G184400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-18GRAS family protein