PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1587
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 567aa    MW: 63676.4 Da    PI: 4.6324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1587genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17139197155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr++  +g+WvAeIr p + n    k   r +lg+f  a +Aa a+++a+k+++g
  Gh_D09G1587 139 CKYRGVRQRI-WGKWVAEIRQPINgNRlasKGnNRLWLGTFSNAIDAALAYDEAAKAMYG 197
                  79*****998.**********877455997447************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-11139197IPR001471AP2/ERF domain
CDDcd000181.18E-27139207No hitNo description
Gene3DG3DSA:3.30.730.101.3E-26140206IPR001471AP2/ERF domain
PROSITE profilePS5103220.784140205IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17140206IPR016177DNA-binding domain
SMARTSM003801.8E-31140211IPR001471AP2/ERF domain
PRINTSPR003673.5E-10141152IPR001471AP2/ERF domain
PRINTSPR003673.5E-10187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MVSPSSIANR RWELKVIPNV SVLLAGQACN MARWVSVVHN ISLEKVLMQG MMEHVVVPMK  60
IKRSSCDTED GVIGSNKKPR ARRNGRESVE DTIEKWKKYN NNQLGLGEED GLKKVSKLPA  120
KGSKKGCMQG KGGPENSRCK YRGVRQRIWG KWVAEIRQPI NGNRLASKGN NRLWLGTFSN  180
AIDAALAYDE AAKAMYGSYA RLNFPDHHSK ESVDNSTTEI GSIESTSTST LDDKRASYET  240
PAVEPVEESK VLLEIKSTDK HDYSQVCTEE EAEDAATDAR ASESTGCNSS KELRIHNSNG  300
INELKDEECQ LRNSCMDSDY YNTQTTLERR GTESEVELSH NIIPRPSDFN FRYNYLDNED  360
QDAGITIFEL EPFKDVKVET PVTRENWEGE LAGSIESGKG YSCFFSEDDN LKTELTDSDI  420
YCKPISKMNA EGSISRDEVD VEPGGFNDFY NYISFDDVYD LKRYEPPDSS CQQQLNTPTS  480
VGGSFNRSTN KLESVHSWSG EAIADVKPFA LIRNDKYGLG GGLEESGNQD ETGFDLDHTM  540
EYLRPDVDLD FLEGIKYTDL WFPERGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-17141205360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.158880.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098694540.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671029.10.0PREDICTED: uncharacterized protein LOC107890932
RefseqXP_016671030.10.0PREDICTED: uncharacterized protein LOC107890932
TrEMBLA0A1U8HYG40.0A0A1U8HYG4_GOSHI; uncharacterized protein LOC107890932
STRINGEOY070751e-178(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2867523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.19e-34ERF family protein