PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1640

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 175aa MW: 19772 Da PI: 8.3973

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1640	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	87.5	1.3e-27	9	58	5	57
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ + +++ ++l+CaACgCHRnFHR+ + Gh_D09G1640 9 LYRECLRNHAASLGSYATDGCGEFTLD---HTSLSTLQCAACGCHRNFHRKVS 58 6***********************8...6689**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.3E-24	9	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-23	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.849	10	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	9.0E-18	10	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	92	159	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.94E-15	92	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.0E-29	99	157	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEKEYPSDLY RECLRNHAAS LGSYATDGCG EFTLDHTSLS TLQCAACGCH RNFHRKVSYC 60 NSNSRSRGDP VERVDYGDDG GRPPVLLEYS TEAGARSGKK RFRTKFTAEQ KEKMLEFAEK 120 LGWRLQRRDE EDQVDKFCRG IGVSRQVFKV WMHNHKNTST ASSVSTCNAS SLTTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-22	100	162	18	79	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670942.1	1e-130	PREDICTED: zinc-finger homeodomain protein 9-like
Swissprot	Q9SB61	8e-40	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1U8HY53	1e-129	A0A1U8HY53_GOSHI; zinc-finger homeodomain protein 9-like
TrEMBL	A0A2P5QZ19	1e-129	A0A2P5QZ19_GOSBA; Uncharacterized protein
STRING	Gorai.006G190600.1	1e-128	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18527	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-42	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]