PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1643

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 403aa MW: 44317.1 Da PI: 8.6546

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1643	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	219	272	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Gh_D09G1643 219 PRMRWTSSLHARFVRAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRT 272 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	216	273	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	216	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-24	219	272	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-7	220	271	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MFNKGDLREQ YMNRVPDLSL QISPPNPAPS TACTGNSSFD INWRRKDALN SLTYGSQADT 60 QLSLANPASS ASQIDSPSPN YFPTTYDDQT RHRNLLKCGQ NGGQLSNINH GISLLDVPGP 120 KPTKGIPVYS NTMSLPFLSS DSFVDMDPDK LGFYSSSAAS VLHSADACRR ASEAARFNGI 180 SLEKLRPQFH HHYAQHGAAM GSSRFIPKLQ SSKRNTRTPR MRWTSSLHAR FVRAVELLGG 240 HERATPKSVL ELMDVKDLTL SHVKSHLQMY RTVKSSDKPA SSSEKNRNEG ECAEEDCLGV 300 SRNTVSGNDK CSEKQGSTSP NLSIQHDYDE NNNSIHLWTN SSSRGVGLSS WRNPDECRPQ 360 APSSSQSGKQ FDGSSLSQQI LRVSSVELQN PSLHFSLGKQ TTD

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MFNKGDLREQ YMNRVPDLSL QISPPNPAPS TACTGNSSFD INWRRKDALN SLTYGSQADT  60
QLSLANPASS ASQIDSPSPN YFPTTYDDQT RHRNLLKCGQ NGGQLSNINH GISLLDVPGP  120
KPTKGIPVYS NTMSLPFLSS DSFVDMDPDK LGFYSSSAAS VLHSADACRR ASEAARFNGI  180
SLEKLRPQFH HHYAQHGAAM GSSRFIPKLQ SSKRNTRTPR MRWTSSLHAR FVRAVELLGG  240
HERATPKSVL ELMDVKDLTL SHVKSHLQMY RTVKSSDKPA SSSEKNRNEG ECAEEDCLGV  300
SRNTVSGNDK CSEKQGSTSP NLSIQHDYDE NNNSIHLWTN SSSRGVGLSS WRNPDECRPQ  360
APSSSQSGKQ FDGSSLSQQI LRVSSVELQN PSLHFSLGKQ TTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	220	274	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670937.1	0.0	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A1U8HY50	0.0	A0A1U8HY50_GOSHI; transcription repressor KAN1-like
STRING	Gorai.006G190900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17814	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	2e-46	G2-like family protein