PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1659

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 245aa MW: 27223.3 Da PI: 9.3898

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1659	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.5e-13	73	121	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++ ++G g+W++ ++ + R++k+c++rw +yl Gh_D09G1659 73 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAAgLLRCGKSCRLRWVNYL 121 79*********************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	127	169	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ Gh_D09G1659 127 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNHWN 169 89******************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-21	64	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.532	68	121	IPR017930	Myb domain
SuperFamily	SSF46689	1.49E-26	71	168	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-10	72	123	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-11	73	121	IPR001005	SANT/Myb domain
CDD	cd00167	3.29E-8	75	121	No hit	No description
PROSITE profile	PS51294	26.751	122	176	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-24	124	176	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-15	126	174	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-15	127	169	IPR001005	SANT/Myb domain
CDD	cd00167	3.64E-11	129	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MQSVTNPTAG SRKSSHGSWG QTQTLVYIDI LLVSLFISPS LHLLWSVAFA CLNSLPLGLQ 60 MRKPCCEKKD TNKGAWSKLE DQKLTDYILK HGEGCWRSLP QAAAGLLRCG KSCRLRWVNY 120 LRPDLKRGNF GEDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNHWNI HLRKKLLMMG 180 IDPNNRRSLL SPTLTKSNAS NDSSSACQPF NPATASETIS STCLPDLNLD LTIAPPLSHQ 240 NLALN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-28	70	176	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459165	2e-65	AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670915.1	1e-169	PREDICTED: myb-related protein 308-like
Swissprot	P81393	8e-74	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A1U8HY44	1e-168	A0A1U8HY44_GOSHI; myb-related protein 308-like
STRING	Gorai.006G192400.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	5e-72	myb domain protein 3

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]