PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1703
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 337aa    MW: 36410.8 Da    PI: 6.2561
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1703genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.12.2e-36851824104
          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskks 100
                   k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++      + + + ++s+ +++ + ++k++
  Gh_D09G1703  85 PKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV----NGTLKIPTSSGKQEGELPKKRR 178
                  5899**********************************************************9999955521....1111111111222222222222 PP

          TCP 101 qksa 104
                  ++++
  Gh_D09G1703 179 RRPS 182
                  2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-3089172IPR005333Transcription factor, TCP
PROSITE profilePS5136927.55989143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MECNRNQTIE EIDESINNNT AVIINEERHQ SNNTTPTFSA SDATLMDPNQ PMKEEDLTDT  60
EPQELANPTL VQVVPAARTQ QSLAPKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL  120
GHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVNGTL KIPTSSGKQE GELPKKRRRR  180
PSNSEFIDIN EHQSSVSSGL APIAPMTCNS FNLNSQGLVP IWPMGTFSVL PAAPGSNQAQ  240
LWAIPATATP FFNVTGRPIS SFVSAMQPEV QDSSVGSMGS SVLPTSSSGA TSVSNGNNSS  300
NHSTTQMLRE FSLEILDKRE LQFLGCPANQ QAPCSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180PKKRRRRP
2174179KKRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.95120.0ovule
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780915e-76JX578091.1 Gossypium hirsutum clone NBRI_GE10040 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670745.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT893e-86TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A1U8HXM00.0A0A1U8HXM0_GOSHI; transcription factor TCP19-like
STRINGGorai.006G197000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.23e-86TCP family protein