PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1705

Common Name

DBP3b

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 221aa MW: 23826.6 Da PI: 4.2839

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1705	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.5	5e-16	51	100	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+ +l+g Gh_D09G1705 51 SSYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAAIALKG 100 679*6..678*****843...5*********************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.24E-17	51	109	IPR016177	DNA-binding domain
CDD	cd00018	3.74E-28	51	109	No hit	No description
PROSITE profile	PS51032	19.862	52	108	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-28	52	116	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-9	52	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-26	52	109	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MANLSPEVNP PTPQIPDSTL DLVQLPNHSN LPSIPTPNPV QYSWPGSGRH SSYRGIRSRS 60 GKWVSEIREP RKTTRIWLGT YPTPEMAATA YDVAAIALKG PDTDLNFPDM ILSYPKVAST 120 SAADIRAAAA SAAASRLPMP DTGSSKQDQG NLQNEGTAST FSTCMESGSG QEYIDEEELL 180 NFPNLMVDMA GGMLVTPPRI NSLASDDSPE ISDIESLWTY P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-13	50	108	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15698	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109868403	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ224383	0.0	DQ224383.1 Gossypium hirsutum DRE-binding protein 3b (DBP3b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313703.1	1e-161	ethylene-responsive transcription factor ERF025-like
Swissprot	Q9FJ90	9e-49	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	Q076D7	1e-160	Q076D7_GOSHI; DRE-binding protein 3b
STRING	Gorai.006G197200.1	1e-139	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1957	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-37	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]