PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1771
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 160aa    MW: 18570.6 Da    PI: 8.6916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1771genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-081121531055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + RR++i +++  L++l+P +    +k  +Ka +L + ++Y++sLq
  Gh_D09G1771 112 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 153
                  78*******************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000251.3E-1065113IPR006689Small GTPase superfamily, ARF/SAR type
Gene3DG3DSA:3.40.50.3009.6E-573108IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003281.7E-137599IPR006689Small GTPase superfamily, ARF/SAR type
PROSITE profilePS5088813.186102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PRINTSPR003281.7E-13102127IPR006689Small GTPase superfamily, ARF/SAR type
SuperFamilySSF474593.93E-13103158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-5108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-13109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-8111157No hitNo description
PfamPF000103.4E-6112153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005525Molecular FunctionGTP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVQVIRVVPY SAVQLFAYET YKTRETLGQW CVVFISFGVK EMDLGEDVDA VDGGSRLGEC  60
KFEMTKCKSQ QLHQPTQYPT LEELSIGMIK FKAFDLGCHQ IARRVWKDYY AKVRREKISE  120
RMKYLQDLVP GCNKITDKAG MLNEIINYVQ SLQRQVEVKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.116803e-67boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098755933e-67
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5852764e-59JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491357.13e-60PREDICTED: GTP-binding protein SAR1-like isoform X1
RefseqXP_012491366.12e-60PREDICTED: GTP-binding protein SAR1-like isoform X2
RefseqXP_012491372.12e-60PREDICTED: GTP-binding protein SAR1-like isoform X2
RefseqXP_012491379.12e-60PREDICTED: GTP-binding protein SAR1-like isoform X2
TrEMBLA0A2P5RGR31e-66A0A2P5RGR3_GOSBA; Uncharacterized protein
STRINGGorai.001G193500.12e-59(Gossypium raimondii)
STRINGGorai.001G223600.12e-59(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16325314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.14e-23cryptochrome-interacting basic-helix-loop-helix 1