PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1773
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 520aa    MW: 58105.5 Da    PI: 4.4592
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1773genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.14.2e-5491371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+Ptdeel+++yL+ k++g+++++ e+i+e+d++k+ePwdLp  +++k+++ ew+fF++ d+ky+tg+r nrat++gyWkatgkd++++s +
  Gh_D09G1773   9 LPLGFRFRPTDEELIHFYLRSKINGNRNDEIEIIREIDVCKCEPWDLPdlSAIKTQDPEWFFFCPLDRKYPTGNRLNRATEAGYWKATGKDRKIKS-G 105
                  699************************999999**************96448888999**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++l+g+kktLvfy+grap+g++t+Wvmheyr 
  Gh_D09G1773 106 STLIGMKKTLVFYNGRAPRGKRTNWVMHEYRT 137
                  9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-606160IPR003441NAC domain
PROSITE profilePS5100557.4069160IPR003441NAC domain
PfamPF023652.2E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGVLLLNSLP LGFRFRPTDE ELIHFYLRSK INGNRNDEIE IIREIDVCKC EPWDLPDLSA  60
IKTQDPEWFF FCPLDRKYPT GNRLNRATEA GYWKATGKDR KIKSGSTLIG MKKTLVFYNG  120
RAPRGKRTNW VMHEYRTTLD ELDGTKPGQN AFVICRLFKK QDETIEDINS DEVDPSVLSP  180
TEDMVSELEV PQASPTVKQE AEKACDTSET CFASFRDEVI SNAVAPIFEG NSDNHDNYNE  240
IDQVAEISPA EVDLLEEALN HFYDPMMEPL FSPLHNQIEA EQAPWMFDHV GNCSNVEFGH  300
GTNENDPYIS NFLESILKNS DDYHGDDTGS QKNSESETHT TMTIGKDGGF CSKPDSEVAQ  360
VLLGTDTVNG VPPIGTAEDC GIPNSDGELF SNHMNTSCDV DGAITGIRTR SRPSRSQLDS  420
ENPLAQGNAS RRLRLQCKLQ VHSLHCDNAI YNRSDVEIED DSKSVVTKEE KVVEKDITVG  480
CNADFGIVLG SKTIVSVRKE TSSRWSKVFG EFSDSQTSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-42816116166NO APICAL MERISTEM PROTEIN
1ut4_B7e-42816116166NO APICAL MERISTEM PROTEIN
1ut7_A7e-42816116166NO APICAL MERISTEM PROTEIN
1ut7_B7e-42816116166NO APICAL MERISTEM PROTEIN
3swm_A9e-42816119169NAC domain-containing protein 19
3swm_B9e-42816119169NAC domain-containing protein 19
3swm_C9e-42816119169NAC domain-containing protein 19
3swm_D9e-42816119169NAC domain-containing protein 19
3swp_A9e-42816119169NAC domain-containing protein 19
3swp_B9e-42816119169NAC domain-containing protein 19
3swp_C9e-42816119169NAC domain-containing protein 19
3swp_D9e-42816119169NAC domain-containing protein 19
4dul_A7e-42816116166NAC domain-containing protein 19
4dul_B7e-42816116166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.128530.0boll| ovule| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738662190.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472080.0KC847208.1 Gossypium hirsutum NAC domain protein NAC31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670852.10.0PREDICTED: NAC domain-containing protein 62-like isoform X2
RefseqXP_016670853.10.0PREDICTED: NAC domain-containing protein 62-like isoform X2
TrEMBLA0A1U8HXW30.0A0A1U8HXW3_GOSHI; NAC domain-containing protein 62-like isoform X2
STRINGGorai.006G203800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.19e-90NAC domain containing protein 62