PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1872
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 502aa    MW: 56238.1 Da    PI: 6.505
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1872genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA503.9e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Gh_D09G1872  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                 ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.4E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-11545No hitNo description
CDDcd002027.04E-16653No hitNo description
PfamPF003206.4E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.0E-10266351IPR028020ASX homology domain
PfamPF165506.8E-9284349IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAETDDYEDN  60
RASRVKSISI NKNKEVKFLK RKPNHDTMVV APDYNQGFRK FVDDDTSNRS SSGSAISNSE  120
SCAQFGGADA SDLTGPAQSN VWDSMWRNLQ KIYVLFYTNS SLHISLESGS SEEDLLLESQ  180
IPMVSFEFGH GSVLIRHRSS IAREEESEAS SLSVENKQYS VNEAYSHCSS FPTYNDSKGF  240
KISGHGIEKA NTARQGMEHE QLRRDKVQHE KSLMLESHNS PLCKIDLNDV LNFEEFMKHL  300
TNEEQQQLLQ YLPPLDSSKF PDSLENMFES PQFKENLCYF QKLLEEGVFK ISVPGVKAED  360
CKTLKRLVLF NLTKSHWVEH CHVLKKCKST IGGCATARGP NATALNNLAT MKRSRDSQCQ  420
NFPEARNLNI PKRVIMKATC ENKELVDNDG SCFSPGSLLT LPHDGSSPLL DSLHYVDESS  480
DQDLLLDVPS NGSFPLAELL HL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486772.10.0PREDICTED: GATA transcription factor 26-like isoform X3
SwissprotQ8W4H11e-123GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0D2S0C00.0A0A0D2S0C0_GOSRA; Uncharacterized protein
STRINGGorai.006G214400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-110GATA transcription factor 26