PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1965

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 477aa MW: 53686.3 Da PI: 5.1197

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1965	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.5	1.4e-35	24	114	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F kg+k+ll++i+ Gh_D09G1965 24 FLLKTYDMVDDSATDDIVSWSSNNKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKGQKHLLKNIH 111 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 rkk Gh_D09G1965 112 RKK 114 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.1E-62	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.04E-36	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.0E-38	21	113	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.3E-19	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.2E-31	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-19	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-19	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MASTLPSASA AGSGGGGGCG VAPFLLKTYD MVDDSATDDI VSWSSNNKSF VVWNPPEFAR 60 LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KGQKHLLKNI HRKKPIHSHS 120 NPQGSFVDPE RAGFEEEIER LSREKTALEA NVLRFREERS AAKHQIEELT LRADQMEQRQ 180 ETLFNFLDKA VQDPAFVEHL VHKIESMESL DVAAYNKKRR LPQIDRIEPV GEICLLDNNN 240 NNSSSRAEFG NIFHQDFADK LRLELSPAVS DIHVVSQSTQ SSDEDGVSPR IRISEGEPKD 300 AYMRSEGLLF APERLDLSES SRSFTLQQRL NSNDEPDNHI SCLLNLTLAS SSSQVNRSPS 360 LTMMSQLGQE IGKDPKSRSN ANSKDSDTRA SGNSRNMING EATLSSPKED LNSNQKPATP 420 PVRVNDVFWE RFLTERPDSS DDEESNSDHQ ANPYKEEDKS STYGLARNAK NMEQLSL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MASTLPSASA AGSGGGGGCG VAPFLLKTYD MVDDSATDDI VSWSSNNKSF VVWNPPEFAR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KGQKHLLKNI HRKKPIHSHS  120
NPQGSFVDPE RAGFEEEIER LSREKTALEA NVLRFREERS AAKHQIEELT LRADQMEQRQ  180
ETLFNFLDKA VQDPAFVEHL VHKIESMESL DVAAYNKKRR LPQIDRIEPV GEICLLDNNN  240
NNSSSRAEFG NIFHQDFADK LRLELSPAVS DIHVVSQSTQ SSDEDGVSPR IRISEGEPKD  300
AYMRSEGLLF APERLDLSES SRSFTLQQRL NSNDEPDNHI SCLLNLTLAS SSSQVNRSPS  360
LTMMSQLGQE IGKDPKSRSN ANSKDSDTRA SGNSRNMING EATLSSPKED LNSNQKPATP  420
PVRVNDVFWE RFLTERPDSS DDEESNSDHQ ANPYKEEDKS STYGLARNAK NMEQLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-24	12	113	17	129	Heat shock factor protein 1
5d5v_B	7e-24	12	113	17	129	Heat shock factor protein 1
5d5v_D	7e-24	12	113	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ748621	0.0	KJ748621.1 Gossypium hirsutum HSF18 (HSF18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486952.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-159	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1U8HWP9	0.0	A0A1U8HWP9_GOSHI; heat stress transcription factor A-5-like
STRING	Gorai.006G224000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-154	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]