PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2268
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 420aa    MW: 47159.4 Da    PI: 5.1047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2268genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS90.13.5e-28146259100215
         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  qaI+e v+++++vHiiD++i+ G+QW  L+qaL sR e p   l++T+v+    + k  +e tg+ L +fA++lg+pf+f+v+v++++ dl+ + ++v
  Gh_D09G2268 146 QAIVEHVSKAKKVHIIDLGIKTGVQWTVLMQALVSRYECPIeILKVTTVAT---NGKWLIEGTGKWLLSFAQSLGLPFSFKVVVVSDMLDLKENLFEV 240
                  8***********************************9766549********...578999************************************** PP

         GRAS 197 kpgEalaVnlvlqlhrlld 215
                  + gE++aV  +  l ++l+
  Gh_D09G2268 241 DVGETVAVYAATTLRSMLA 259
                  ***********99999885 PP
2GRAS84.71.5e-26259385246371
         GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                  a+ ns+ F++rf+eal ++s+ fd+l + + r+  +r  vE +++++ i+n+va+eg+err rh ++  Wr+ + + G+++v+ls +   qa l+l++
  Gh_D09G2268 259 ANQNSPIFANRFVEALFFFSVYFDCLVTCMNRNCVNREIVESVYFAEGIRNMVAAEGEERRVRHVKFDVWRAFFIRYGMEEVELSMSSLYQACLVLKT 356
                  5789********************************************************************************************** PP

         GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvS 371
                  ++ ++  +++ + ++l+  Wk+ p+ s+S
  Gh_D09G2268 357 FAcGRFCTLDMNGKCLLVRWKGTPVHSIS 385
                  **999899*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.2E-25146259IPR005202Transcription factor GRAS
PROSITE profilePS5098514.963146367IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSNDVLLSFV GGFPDKRSVC NNVCESFYGA AIDGCYGLLN NYGNEFERLH TGRKTEEVDD  60
VTVLKNGVEG NLSIEDVMRV AGLTLKETQD VELALLLLAA AEKVGYREFE CTSMLVKECE  120
FMSSRIGNLV QQKIEIDTGK GSGRIQAIVE HVSKAKKVHI IDLGIKTGVQ WTVLMQALVS  180
RYECPIEILK VTTVATNGKW LIEGTGKWLL SFAQSLGLPF SFKVVVVSDM LDLKENLFEV  240
DVGETVAVYA ATTLRSMLAN QNSPIFANRF VEALFFFSVY FDCLVTCMNR NCVNREIVES  300
VYFAEGIRNM VAAEGEERRV RHVKFDVWRA FFIRYGMEEV ELSMSSLYQA CLVLKTFACG  360
RFCTLDMNGK CLLVRWKGTP VHSISLQVLS KLQDQASTRF HPCMESFDDY LSELNESFNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-23146377118368Protein SCARECROW
5b3h_A8e-23146377117367Protein SCARECROW
5b3h_D8e-23146377117367Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022761269.11e-152DELLA protein RGL1-like
TrEMBLA0A0D2QH250.0A0A0D2QH25_GOSRA; Uncharacterized protein
STRINGGorai.006G258800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3683222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-34RGA-like 2