PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2324
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 274aa    MW: 30540.5 Da    PI: 4.903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2324genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-184290355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Gh_D09G2324 42 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 90
                 56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3341104IPR001471AP2/ERF domain
CDDcd000183.33E-284197No hitNo description
PROSITE profilePS5103220.6134198IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-204299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-284298IPR001471AP2/ERF domain
PRINTSPR003678.7E-84253IPR001471AP2/ERF domain
PfamPF008472.8E-114490IPR001471AP2/ERF domain
PRINTSPR003678.7E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSTSKTYEAI ETQAGFALLQ RNTTPPSHER RGRRKQAEPG RFLGVRRRPW GRYAAEIRDP  60
TTKERHWLGT FDTAQEAALA YDRAALSMKG TQARTNFIYS NNNNNNNNGD NNFLSVLSPQ  120
FDVSHHHQFQ VQPNNVPNSE IGGSTTYGSV DDGYLACIVP RDCLKPPSNP TSSSSFMNQN  180
INAYTSPQNQ GFGEPNQGFI WGDNMQQAWD MNNDELLAII NNVPTPLMVE DGCMGGFYGT  240
NYVDDNTSSY ENSMVIPQTT SMATFSTDVV DFGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2032102576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164500.0JX616450.1 Gossypium hirsutum clone NBRI_GE61134 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718784.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q21e-55ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A1U8LZT20.0A0A1U8LZT2_GOSHI; ethylene-responsive transcription factor ERF086-like
STRINGGorai.006G264300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-56ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]