PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2356
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 168aa    MW: 20127.4 Da    PI: 8.4253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2356genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM286.2e-093681245
          NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePw 45
                 p+GfrF Pt +elv++yL kkv g++l+++++  ++e++ y++ P 
  Gh_D09G2356 36 PVGFRFLPTPDELVKQYLIKKVLGNPLPVSDFleVEEAEFYTTPPM 81
                 79************************99877645888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-1432131IPR003441NAC domain
PfamPF023651.9E-1136126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAMVEVEKNY EDVHQNWGHR IPVEEDYYYN WHNQPPVGFR FLPTPDELVK QYLIKKVLGN  60
PLPVSDFLEV EEAEFYTTPP MSCGSWKLRK TREIFDTMGN KIAFKFYFVY YSKLGKTHWR  120
IDEFRLPAKF YKDFKVNVRM IMCFNTLKST YSSTGVIFFS LHCIIFII
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483320.14e-27PREDICTED: protein FEZ-like isoform X2
TrEMBLA0A0D2T4W92e-92A0A0D2T4W9_GOSRA; Uncharacterized protein
STRINGGorai.006G267800.13e-93(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3683522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-07NAC domain containing protein 19