PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2357
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 215aa    MW: 26206.3 Da    PI: 5.0915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2357genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.41.2e-22661892128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  p+Gf+F Pt+eelv+eyL +k+ +++l++ ++  ++e+ +y+++P++L   ++++ek+wyf++++dk+ ++++ ++   + g W+ +   +e+ ++kg
  Gh_D09G2357  66 PVGFQFLPTNEELVTEYLINKIFHNPLPFWDFseVEEAALYSTHPKSLV-DFANGEKKWYFYIHKDKNFSNNTIRKVEDNLGSWSLKWY-EEIQDTKG 161
                  89************************777554449999**********6.777899***********99987766667789***97655.899999** PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++   + +vf+++r+   +kt+W m+e +l
  Gh_D09G2357 162 SKIAFNNHFVFFSKRR---KKTHWKMDELQL 189
                  ************4433...57******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-2063204IPR003441NAC domain
PROSITE profilePS5100523.37765211IPR003441NAC domain
PfamPF023653.4E-1366188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVLIQNYEDL HWSFLHQISK NRVKEDELEN PVKEDLHKWD YSIPVSENRV EEDREEDHYE  60
LDNPIPVGFQ FLPTNEELVT EYLINKIFHN PLPFWDFSEV EEAALYSTHP KSLVDFANGE  120
KKWYFYIHKD KNFSNNTIRK VEDNLGSWSL KWYEEIQDTK GSKIAFNNHF VFFSKRRKKT  180
HWKMDELQLR PEWYKDFNLE EEWALGILKR GTEYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180KRRKKTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483318.11e-147PREDICTED: protein FEZ-like isoform X1
TrEMBLA0A2P5WGL71e-133A0A2P5WGL7_GOSBA; Uncharacterized protein
STRINGGorai.006G267900.11e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2867023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-15NAC family protein