PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0210

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 202aa MW: 22801.7 Da PI: 10.0736

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0210	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.6e-36	10	67	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++ lkcprCds ntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Gh_D10G0210 10 HQQPLKCPRCDSLNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 67 7899***********************************************9976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	9	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-32	12	66	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.41	14	68	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	16	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKKRRTQNQH QQPLKCPRCD SLNTKFCYYN NYNKSQPRHF CKACKRHWTK GGTLRNVPVG 60 GGRKNKRLKP GIKAASTAIK TSTASSDNSN RLLLDSLMAI QWQQQHPFPP LLDRNNMLMG 120 SSSSLLLPQT QGLEFPFSSS SSSSISPSIY NYTGEANSSR SQTWQVPSAS MDMANYWNLD 180 DIDELVSTDL NNIPWVDSEI KP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726204.1	1e-149	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1U8MKT4	1e-148	A0A1U8MKT4_GOSHI; dof zinc finger protein DOF1.4-like
STRING	EOY28319	2e-59	(Theobroma cacao)
STRING	cassava4.1_034118m	4e-60	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-30	OBF binding protein 4