PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0249

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 254aa MW: 28303.5 Da PI: 10.1604

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0249	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.6e-38	32	89	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ +kcprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+ Gh_D10G0249 32 HTPQKCPRCESRNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKR 89 56789**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	34	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.873	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MKQNQQQGRR LKPLMAAEHH HHHHHHHQQQ QHTPQKCPRC ESRNTKFCYY NNYSLSQPRY 60 FCKACRRYWT QGGTLRNVPV GGGCRKGKRP KLSSSGDDNP TRQATQRNLI SPPVQLQAKE 120 SDSLVSSSAA MGSYYPASGF LSSLAAIQPM NQPQCLKQPL NQALRIGGGD FGSSSSNLGL 180 LQGYGVPFLG SQHHQQTQFQ WPAAGNSYYQ QNWHQNFINE AVTSTVKVTN TSNSKTASSL 240 SPNQWPDLPA YGAP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF351546	2e-83	AF351546.1 Gossypium hirsutum clone JESPR309 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710999.1	1e-171	PREDICTED: dof zinc finger protein DOF4.4-like
TrEMBL	A0A1U8LCV2	1e-169	A0A1U8LCV2_GOSHI; dof zinc finger protein DOF4.4-like
STRING	Gorai.011G029200.1	1e-163	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	4e-33	Dof family protein