PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0250
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 290aa    MW: 31465.2 Da    PI: 9.0457
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0250genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-393797262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++
  Gh_D10G0250 37 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 97
                 7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.1E-343995IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-274095IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5254195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLRNCEKMVA VITSSATNEW PQKLMEKPSQ EQQQVQQQQA LKCPRCDSSN TKFCYYNNYS  60
LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRVKRPT VSASTPPSIG GASPTSGGGG  120
GVNPNSTTSS QHINSLFYGL TANDPYHDVI NLPFSRSSTV TGYDLQPQMS GLGLGFSSGD  180
NTDHYPPLLS SYTNIFGSSS SSSTTTTTPT IASLLASTLN QHKFINGGVK NTEALPPFQD  240
LQTTAMKDIK VPCQNHLEQI TSLDPSLYWS TNIGAWHDPT NIGSSVTSLI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5322950.0EU532295.1 Gossypium barbadense clone I10-23 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730053.10.0PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotQ9FZA49e-39DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A1U8MWZ90.0A0A1U8MWZ9_GOSHI; dof zinc finger protein DOF3.1-like
STRINGGorai.011G029300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-36Dof family protein