PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0272
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 238aa    MW: 26718.3 Da    PI: 8.299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0272genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2096146255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa+a+++a+++++g
  Gh_D10G0272  96 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAARAYDKAALRIRG 146
                  7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-3295155IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2496156IPR016177DNA-binding domain
PROSITE profilePS5103224.55396154IPR001471AP2/ERF domain
CDDcd000181.06E-2996154No hitNo description
PfamPF008477.6E-1596146IPR001471AP2/ERF domain
SMARTSM003801.2E-3796160IPR001471AP2/ERF domain
PRINTSPR003671.1E-1197108IPR001471AP2/ERF domain
PRINTSPR003671.1E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAVESRQDTA SDKLLLEHVW ANFIGRKEAN TAAEPSMEIL ERLPSLGRWI SMGADAWEGL  60
LDGIIPSGNK IDQSCNDKTS SKVCSMRVDK VATTRHYRGV RRRPWGKYAA EIRDSSRKGA  120
RVWLGTFETA EEAARAYDKA ALRIRGPKAY LNFPLETVAK KATMVDNSRT GLGCVGNVPN  180
DRKRGCRDWE QNREYVMVEQ PTMKRMASVA EQVVEDGYGL FEFPDLGSDY LESLLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2792157166ATERF1
3gcc_A1e-2792157166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5845411e-94JX584541.1 Gossypium hirsutum clone NBRI_GE17876 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711142.11e-174PREDICTED: ethylene-responsive transcription factor ERF091
SwissprotO495158e-45ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A2P5QKJ01e-176A0A2P5QKJ0_GOSBA; Uncharacterized protein
STRINGGorai.008G219300.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-38ERF family protein