PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0295
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 258aa    MW: 28761.8 Da    PI: 8.6397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0295genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-1270116354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN  +++Lr+llP +     +K++Ka+ L ++v+ +k+L
  Gh_D10G0295  70 KSHSEAERRRRERINAHLDTLRTLLPYR-----EKMDKATLLGEVVRQVKEL 116
                  58*************************8.....8***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.42167116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1271118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1371122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAAFYFNNNI FLSGNCYSGF LDPFSRDLDP CNGISQSLVL DNEKSELVVK SPVKVGKKSV  60
SEEKVIAALK SHSEAERRRR ERINAHLDTL RTLLPYREKM DKATLLGEVV RQVKELKKAA  120
TEASKGVLVP VDDDEVIVET CHAEANGAYC FKASICCDYR PQLLTDLRQA LDALPIKMVK  180
AEISTLGSRL RKDFVFTGCR TTANGDDAES RQYLAGSVRR ALNSVLEKAS ISPEYLPYST  240
FPKKRQRISY FDSSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.126450.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456134.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A2P5QV600.0A0A2P5QV60_GOSBA; Uncharacterized protein
STRINGGorai.011G034000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-32bHLH family protein