PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0582
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 253aa    MW: 27553.3 Da    PI: 8.0435
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0582genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96.2e-402079362
       zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk  k+s
  Gh_D10G0582 20 QQQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKGTKRS 79
                 789****************************************************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-231968IPR003851Zinc finger, Dof-type
PfamPF027016.7E-332176IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2732377IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQDPMGFHQM KAPAFQELEQ QQLKCPRCDS TNTKFCYYNN YNLSQPRHFC KNCRRYWTKG  60
GALRNIPVGG GTRKGTKRSS SSSTNNPKRQ PNPSPDPTPN QKIPDPSPPP PTSSSSSMFP  120
QQIVLSSGAQ NSDSDIDSTR MYLLPVDHQD GKMMDIGGSF SSLLASTGQF GNLLEGFNSN  180
GSGLKTLNHF GGNLDSGCEM DQSSGGDPRF VESSKNGESY LDAQGGRDTS CWSGDSNGWP  240
DLSIYTPGSS LRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.108740.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098868150.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274240.0HQ527424.1 Gossypium herbaceum clone NBRI_B2_1666 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701098.10.0PREDICTED: dof zinc finger protein DOF3.1
SwissprotO821552e-42DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A1U8KJG60.0A0A1U8KJG6_GOSHI; dof zinc finger protein DOF3.1
STRINGGorai.011G067500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.14e-37DOF zinc finger protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]