PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0600
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 539aa    MW: 59653.8 Da    PI: 7.2417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0600genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07449489954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+RR+ri +++  L++l+P        K++ a++L +A  Y+k L
  Gh_D10G0600 449 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 489
                  69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-14445506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-12448503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-5449489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-4462494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MRLHPKQYGR ESKLHGVKHN ANRRYCIRNN VVKSCSSLKK VFVLYILPIY ISMHAFNTYY  60
DKLHLPRLTL AMVFFLGVDD HSFKEDGCSE SDIKLRFDPT LSYVHSLVSF GKDNNQSGGF  120
LDLKKVSSMD GLGWNGSEIE AKSLPVWNNQ RNDMEDSYFL IPNSSNSFMY GGKMDDLPED  180
IFYQIQELQK SGNLEDALQQ GLCSSPLMSR AYGFSTLNGS VSDIGMPVHS QGINGGDATT  240
TGTLESLDCL ISATNSNTDT SVEDDGISMI FSDCKNLWNF AASSAVSSGS ENTGSNTGRN  300
EHDEIVSQSS SDRCINNGNL SQTKSSNSSK RKNDQTGLTF GPNCGYFNLL HTDLSATEGG  360
FKLIPDNPPK AKKIRSEKHS SSSNINFQQP ASSSVSSSIE EPDPEAIAQM KEMIYRAAAF  420
RPVNLGLEVV EKPKRKNVRI STDPQTVAAR QRRERISERI RVLQKLVPGG SKMDTASMLD  480
EAASYLKFLR SQVKALENLG NKLDTMNAPP PSNFAFNHSL PMQTHSFPLL NPNDHIHHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449454RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700638.10.0PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D26e-85BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0D2T3R20.0A0A0D2T3R2_GOSRA; Uncharacterized protein
STRINGGorai.011G069200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]