PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0772
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 248aa    MW: 28234.1 Da    PI: 9.0865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0772genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.38.7e-38141371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  +p GfrFhPtdeelvv+yLk+k+   +l++ +vi+e+d+++++Pw++p  +   +++ yfFs+r+ +y + ++ +ra+ sgyWk  gk+k++l++ ++
  Gh_D10G0772  14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTDPWSMPGDM---KESKYFFSTRHDSYIN-NKCKRAAGSGYWKPIGKEKPILASgTN 106
                  699***************************.99***************554...4577**********86.6889999***************99677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+++ L+f + + ++g++t+W++h+yrl
  Gh_D10G0772 107 RVVGMRRALIFCQRKCSNGTQTRWLLHQYRL 137
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4010166IPR003441NAC domain
PROSITE profilePS5100543.18214167IPR003441NAC domain
PfamPF023654.0E-2115137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MESQNFVVNG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTDPWSMP  60
GDMKESKYFF STRHDSYINN KCKRAAGSGY WKPIGKEKPI LASGTNRVVG MRRALIFCQR  120
KCSNGTQTRW LLHQYRLVDS VPTLDSTQRS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS  180
HKSETSSAMN MPSCIDFTVE ESSVFGPPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY  240
SNCCMRNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-321216813169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171QRKRSRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.239537e-35boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893858e-74JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698699.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8KDF80.0A0A1U8KDF8_GOSHI; NAC domain-containing protein 83-like
TrEMBLA0A2P5R2200.0A0A2P5R220_GOSBA; Uncharacterized protein
STRINGGorai.011G087700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-52NAC domain containing protein 83