PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 517aa    MW: 58330.4 Da    PI: 5.7449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0904genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.31.1e-921605163374
         GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  e L+++A++++++dl+laq +L rl+++ +sp+g+p+qR+a+yf+eAL++  ++  s      p++ +s+++ ++++ a+k fs + Pi+ f h+t+N
  Gh_D10G0904 160 EDLIRAANCFDTHDLQLAQVILDRLHQRlRSPSGEPLQRAAFYFKEALQSLFTG--S--TWPNPVRLSSWSEIIQTIEAYKSFSGINPIPMFNHFTTN 253
                  689************************99************************9..2..2234777788888************************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  qa+lea++g+   +HiiDfdi+ G+Q+++L++++a+R+ ++   +RiT+v+++e   + e++ ++++L++fA++l+++f++++++  ++e++++++++
  Gh_D10G0904 254 QALLEALDGSaPLIHIIDFDIGFGGQYASLMREMAERNdHSRKFIRITAVVPEE--YSFETRLIEDNLNQFAQALRLRFQIEFVLLPTFETMSFKAFK 349
                  **********7889************************556669********66..99*************************9999*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  + +gE++a+ l+ +++r l   ++++    ++++ ++++sP vvv+v++e  ++  +++sF + f+++le+y+++f+sl+a      e+ +k+E  ll
  Gh_D10G0904 350 FINGENTAILLSPSIFRCL--GLQVA----AFVSDLRRISPSVVVFVDSEvwMESgTTTSFRKNFVNCLEFYAMMFESLDAA---GGEWVRKIETLLL 438
                  ******************9..44444....6*******************665666778********************998...689********** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +++i ++v ++ +        +  Wre + eaG+++v+ls+ a  qa++ll+kv+++g++v +++++lvl+W++ +L+++S+Wr
  Gh_D10G0904 439 RPRIFSAVEAAART------AAPAWREVFCEAGMRAVRLSQLADFQAESLLQKVQVRGFHVAKRQAELVLCWHKTALIATSVWR 516
                  ********998887......7899***********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.061132496IPR005202Transcription factor GRAS
PfamPF035144.0E-90160516IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MRVPVCSPQG NHYPIPKPDL NNNNITITAG NISFLNSSVP ASSCEPTLDL DLRRSPSSAV  60
TEKPVSNPAD NSNCFSVSGP HQQQAGLEWD EHVLRNMDWD AILKDFGLDD ESVPATKTIP  120
PQVINPRLDN HIQNVPELTS CELTHHPLHS DFNLYESYSE DLIRAANCFD THDLQLAQVI  180
LDRLHQRLRS PSGEPLQRAA FYFKEALQSL FTGSTWPNPV RLSSWSEIIQ TIEAYKSFSG  240
INPIPMFNHF TTNQALLEAL DGSAPLIHII DFDIGFGGQY ASLMREMAER NDHSRKFIRI  300
TAVVPEEYSF ETRLIEDNLN QFAQALRLRF QIEFVLLPTF ETMSFKAFKF INGENTAILL  360
SPSIFRCLGL QVAAFVSDLR RISPSVVVFV DSEVWMESGT TTSFRKNFVN CLEFYAMMFE  420
SLDAAGGEWV RKIETLLLRP RIFSAVEAAA RTAAPAWREV FCEAGMRAVR LSQLADFQAE  480
SLLQKVQVRG FHVAKRQAEL VLCWHKTALI ATSVWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2319251636375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698655.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-162SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0D2T5W20.0A0A0D2T5W2_GOSRA; Uncharacterized protein
STRINGGorai.011G102400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-150GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]