PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0987
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 158aa    MW: 18075.7 Da    PI: 8.6094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0987genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-175101196
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f kvlt+ dv k+  l +p++ ++++   +g+  +sk   ++de+g +W++++ y +++g+    vl++GW++Fv  +g+ +gD ++++ d + e+++
  Gh_D10G0987   5 FTKVLTNTDVEKR--LAVPNNSLKHFeleNGN--CSKSFEVKDENGSTWTFRC-YVRNDGAykkPVLSSGWRQFVLNKGVHQGDLITLYKDVEAEASY 97 
                  899**99999986..9*******777864444..9999***************.54444443559***********************9554455556 PP

                  EEEE CS
           B3  93 vvkv 96 
                  ++ v
  Gh_D10G0987  98 KIEV 101
                  6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.5323105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-17492IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-204101No hitNo description
SuperFamilySSF1019365.49E-16491IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-145101IPR003340B3 DNA binding domain
SMARTSM010193.7E-75105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKILFTKVLT NTDVEKRLAV PNNSLKHFEL ENGNCSKSFE VKDENGSTWT FRCYVRNDGA  60
YKKPVLSSGW RQFVLNKGVH QGDLITLYKD VEAEASYKIE VQRKIKLLGR ECWSSLEPDQ  120
PTGATAQVQR KILLFGKECW YFLEPEQPTD ATGKVIQA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.56260.0boll| ovule| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617728.11e-105PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A2P5PXF71e-114A0A2P5PXF7_GOSBA; Uncharacterized protein
STRINGGorai.011G111100.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-11B3 family protein