PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0995

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 405aa MW: 45511.9 Da PI: 6.6861

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0995	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.7e-11	120	155	4	38
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeL 38 +k +rr+++NReAAr+sR+RKka++++Le+ + k L Gh_D10G0995 120 DKIQRRLAQNREAARKSRLRKKAYVQQLENsRLKLL 155 799*************************97334433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-7	117	199	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.76	119	161	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	120	156	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.06E-7	121	161	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.4E-8	122	162	No hit	No description
PROSITE pattern	PS00036	0	124	139	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-29	208	282	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MANGLILLIF SKLLISGTYL DITYTHITPF SSSTYAKAAS IFDSRSMESQ FVPSRRMDIY 60 DPIQQIGMWG ESFNANSNLH ASVSVIAEMD NKISNESETA SHEMLAPSNK YEQEATKRID 120 KIQRRLAQNR EAARKSRLRK KAYVQQLENS RLKLLQLEQE LVQMKQQGVY MGGGLVGGNL 180 GFSAPVKSGI AAFETEYARW MDEQSKQICG LRAALNAEIS DTDLQMLVET GMKHYSELFR 240 MKSTAAKSDV FYVMSGMWKT SAEQFFSWIG GFRPSELLKV LLPQLDSLTE QQFFEVCNLK 300 QSCQQAEDAL SQGMEKLREI VSVTVADGQL GEGSYSSQVT TAMEKVEALV SFVNQADHIR 360 QETLQQMSRI LTIRQTARGL LALGEYFERL RALSSLWATC AREPA

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MANGLILLIF SKLLISGTYL DITYTHITPF SSSTYAKAAS IFDSRSMESQ FVPSRRMDIY  60
DPIQQIGMWG ESFNANSNLH ASVSVIAEMD NKISNESETA SHEMLAPSNK YEQEATKRID  120
KIQRRLAQNR EAARKSRLRK KAYVQQLENS RLKLLQLEQE LVQMKQQGVY MGGGLVGGNL  180
GFSAPVKSGI AAFETEYARW MDEQSKQICG LRAALNAEIS DTDLQMLVET GMKHYSELFR  240
MKSTAAKSDV FYVMSGMWKT SAEQFFSWIG GFRPSELLKV LLPQLDSLTE QQFFEVCNLK  300
QSCQQAEDAL SQGMEKLREI VSVTVADGQL GEGSYSSQVT TAMEKVEALV SFVNQADHIR  360
QETLQQMSRI LTIRQTARGL LALGEYFERL RALSSLWATC AREPA

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457230.1	0.0	PREDICTED: transcription factor TGA4-like
Refseq	XP_012457231.1	0.0	PREDICTED: transcription factor TGA4-like
Refseq	XP_012457232.1	0.0	PREDICTED: transcription factor TGA4-like
Refseq	XP_012457234.1	0.0	PREDICTED: transcription factor TGA4-like
Swissprot	Q39162	1e-170	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A2P5SR58	0.0	A0A2P5SR58_GOSBA; Uncharacterized protein
STRING	Gorai.011G112200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24807	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-156	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]