PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1011

Common Name

WRKY115

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 172aa MW: 19673.7 Da PI: 6.1247

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1011	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.6e-30	98	156	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YY+C+s gC+vkk++er+++d ++v++tYeg+Hnh Gh_D10G1011 98 MDDGYKWRKYGKKPVKNSPNPRNYYKCSSGGCNVKKRIERDRDDHSYVITTYEGSHNHY 156 59********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-32	84	157	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	90	158	IPR003657	WRKY domain
PROSITE profile	PS50811	31.307	93	158	IPR003657	WRKY domain
SMART	SM00774	4.7E-32	98	157	IPR003657	WRKY domain
Pfam	PF03106	4.2E-23	99	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDFSRESSNP NLNITFYPDN LDPVTEFELS DYLMLDGGVF EEDSSSQSIA SSEKGLGGGN 60 EISGATSKTP IMQTEAREKK LEQRHRVAFI TKSEIEVMDD GYKWRKYGKK PVKNSPNPRN 120 YYKCSSGGCN VKKRIERDRD DHSYVITTYE GSHNHYSPFT VYYNQMPPNA WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-24	91	158	10	77	Probable WRKY transcription factor 4
2lex_A	7e-24	91	158	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669839	0.0	KF669839.1 Gossypium hirsutum WRKY transcription factor 115 (WRKY115) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700548.1	1e-117	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	3e-44	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2P5QW21	1e-126	A0A2P5QW21_GOSBA; Uncharacterized protein
STRING	Gorai.011G114200.1	6e-94	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-43	WRKY DNA-binding protein 51

Publications ? help Back to Top
Dou L, et al. Genome-wide analysis of the WRKY gene family in cotton. Mol. Genet. Genomics, 2014. 289(6): p. 1103-21 [PMID:24942461] Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]