PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1019
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 255aa    MW: 27897.8 Da    PI: 9.6403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1019genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19136185255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa a+++a++ ++g
  Gh_D10G1019 136 RYRGVRRRP-WGKWAAEIRDpF-----KaARVWLGTFHTAEAAAMAYDEAALGFRG 185
                  7********.**********66.....56**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-22136194IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-31136194IPR001471AP2/ERF domain
SMARTSM003801.0E-33136199IPR001471AP2/ERF domain
PROSITE profilePS5103224.75136193IPR001471AP2/ERF domain
PfamPF008473.8E-12136185IPR001471AP2/ERF domain
PRINTSPR003674.7E-11137148IPR001471AP2/ERF domain
CDDcd000181.85E-13144195No hitNo description
PRINTSPR003674.7E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKREEGSWSS SSVRREREMR AVVSALTHVV AGEELVADNE NLDGFGSCIG DNDAASTWRR  60
SRQKRGREQL EEKEKEGSSS GSGSGSRGGN FRRRGGGYSC SAGVQDAGAE ANTRAQLAPT  120
YEYKSNEKYK EEAGRRYRGV RRRPWGKWAA EIRDPFKAAR VWLGTFHTAE AAAMAYDEAA  180
LGFRGNKAKL NFPENVKLRS PPSNLTTTLL PVFDSPNTLL SIPTILHSQC HDSLVQNPQV  240
SSTSIGSHAQ SCSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22134196366ATERF1
3gcc_A3e-22134196366ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964RSRQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700553.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1U8KHY80.0A0A1U8KHY8_GOSHI; ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2P5S5T70.0A0A2P5S5T7_GOSBA; Uncharacterized protein
STRINGGorai.011G114900.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2481534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-22ERF family protein