PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1206
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 149aa    MW: 16630 Da    PI: 9.4207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1206genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.8e-0632711054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 + R d++ +++ +L++l+ +      +K + a++L +A+eYI+ L
  Gh_D10G1206 32 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 71
                 78999999**********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-92182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6742271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-122489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00172877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-53276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MENKRSPCSV DHGSFTPLAS KRQKSDLSIS TKDRKDKVGE RIVTLQQLVS PYGKTDTASV  60
LLQAMEYIQF LHEQVKVLSA PYLQTSPTNN MQASIKPAQE LEHYSLRSQG LCLVPLSYTM  120
GVVHSNGADI WAPIKTTSPK FDKPFSQFN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.135730.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455220.11e-109PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_012455223.11e-109PREDICTED: transcription factor bHLH113-like isoform X2
SwissprotQ7XJU26e-59BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A0D2SZF11e-107A0A0D2SZF1_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UJK11e-107A0A0D2UJK1_GOSRA; Uncharacterized protein
STRINGGorai.011G135700.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-61bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]