PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1247
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 399aa    MW: 43792.6 Da    PI: 7.0405
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1247genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.41.8e-09209254550
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                  kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l 
  Gh_D10G1247 209 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLT 254
                  9****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-12205270IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76207271IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-7209257No hitNo description
SuperFamilySSF579593.62E-10209258No hitNo description
PfamPF001702.2E-8209254IPR004827Basic-leucine zipper domain
CDDcd147033.00E-23210259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEKDKSPGLL PPSGRFSGFS SSGIAPNNFN PKTETGSFGQ TSENNHFSHD IRKMPDNPPK  60
KLGHRRAHSE ILTLPDDISF DSDTGIVGAA DGPSYSDEAE EDLFSMYLDM DKFNSSSATS  120
TCQVGESSEA AAPVAVPAKS GLSSGENISN GIGSSMKPRV RHQHSQSMDG STSIKPEMLM  180
SGSEEVSPSD SKKAMSAANL AELALIDPKR AKRIWANRQS AARSKERKMR YIAELERKVQ  240
TLQTEATSLS AQLTLVQQRD TNGLTAENSE LKLRLQAMEQ QVHLQDALND AMKEEIQHLK  300
MLTVHPMPNG GGMMNFASFG ASQQYYPNNH AKHTLLAAQQ FQQLQLHSQK HQHQHQHQFS  360
PNQLHHQQEQ TGEMRARGSM PSPNKKDSSS DVNSTASKD
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699108.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-147POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1U8KDT10.0A0A1U8KDT1_GOSHI; probable transcription factor PosF21
TrEMBLA0A2P5SUK40.0A0A2P5SUK4_GOSBA; Uncharacterized protein
STRINGGorai.011G140400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-148bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]