PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1261

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 241aa MW: 28403.9 Da PI: 6.7257

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1261	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.1	2.2e-26	75	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k +++ ++r+ tr gC+a+l++ ++ kw+++ +++eHnH l+p Gh_D10G1261 75 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKkETQVFTSRPATREGCNAMLRIAAKDGVKWVIYGFVKEHNHVLNP 166 6**************************************999877345556799******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-23	75	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MASTSNPELN TSRNYRQWLT ETFDGHEMLD DELSDSNLDG NGNLINPLDQ HFPMTMEHRE 60 PYIGMEFESA EDAREFYEMY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRAEKYT 120 KKETQVFTSR PATREGCNAM LRIAAKDGVK WVIYGFVKEH NHVLNPSKIP PRRSHRIAFC 180 EDEKDLKIRE LSTELHREKK KSAAYQEQLQ MVLNYIEEHT QRLSLKVNLV SNNLRELEYE 240 D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016699131.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1U8K9F9	0.0	A0A1U8K9F9_GOSHI; protein FAR1-RELATED SEQUENCE 5
STRING	Gorai.011G141900.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-43	FAR1 family protein