PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1262

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 221aa MW: 25442.6 Da PI: 6.6309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1262	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.8	8.3e-19	60	143	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ +++ +C a+++++++k+g+w+++k+ +HnH+l+ Gh_D10G1262 60 FYDDYARQVGFLTRVLSSHKSECDGLLFSRGLGCRGYRDGQTKVEL-----QKQDKQQESCSAMIHLRRDKSGRWVIKKFARDHNHPLV 143 9*******************************876666665555.....78888999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-16	60	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSYFGFYLTN LCASVGEHVD DVDGRLEDST VDESNVHDYD TIQEPYVGMI FESEGAAKTF 60 YDDYARQVGF LTRVLSSHKS ECDGLLFSRG LGCRGYRDGQ TKVELQKQDK QQESCSAMIH 120 LRRDKSGRWV IKKFARDHNH PLVIQLGESR RTLDEEKDKK IQELTAELRV KKRLSASYRE 180 QLLAVVKEVE DHNYNLSMKV QRTLDNLKKL DAEAKEILSG R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677729.1	1e-142	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D2USY3	1e-150	A0A0D2USY3_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.011G142000.1	1e-150	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22264	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-55	FAR1 family protein