PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1263

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 247aa MW: 28641.2 Da PI: 6.5184

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1263	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.4	1.8e-26	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYA+++GFs+r+++ ++s +n i+ r+fvCs+eg+r+ ++ +++ r +r++tr gCka++++ ++ gkw+vtk+++eH+H+l+ Gh_D10G1263 77 DFYFEYARRTGFSIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHAHRK-DRVlpPRPVTREGCKAMIRLAARDGGKWVVTKFVHEHSHKLM 167 6***************************************9998832.222459********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-24	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAGTAGPHEF SDTDRSSEDE TAVNMAKYEG IRQELLQEQN IMDNEFISSE QANEAFGLGN 60 LEPYTGMTFQ SLDDARDFYF EYARRTGFSI RTNRIRHSLK NMAIIGRDFV CSREGFRAAK 120 HAHRKDRVLP PRPVTREGCK AMIRLAARDG GKWVVTKFVH EHSHKLMDRK FPGELPTVNM 180 LSEEEKDKKI QDLYNELHRE RARSATFQQQ LHMILKDLEE HAEFMSIRVE DIVDSLKRVE 240 LNDSSFN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622788	2e-56	JX622788.1 Gossypium hirsutum clone NBRI_GE69666 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455807.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455808.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455809.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455810.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_012455811.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_016699154.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A0D2T7X9	0.0	A0A0D2T7X9_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KEN1	0.0	A0A1U8KEN1_GOSHI; protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A2P5QET0	0.0	A0A2P5QET0_GOSBA; Uncharacterized protein
STRING	Gorai.011G142100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-42	FAR1 family protein