PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1529
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 175aa    MW: 19765.1 Da    PI: 8.4696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1529genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143456123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  Gh_D10G1529 34 YECTFCKRGFTNAQALGGHMNIH 56
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-62360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.53E-73060No hitNo description
PROSITE profilePS5015711.4683461IPR007087Zinc finger, C2H2
SMARTSM003550.00973456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MESAGKRGSS DSSSEENDDD QVKCHTGATT KRSYECTFCK RGFTNAQALG GHMNIHRKDR  60
AKAKQPTSSA VLSMNPRYAP TIPTYEPSRH HPIVEAQTQT NHHMYFKPLL SSPRLPYAPA  120
RSRSLSINEE LLNANFSLQI DPTKVDENEM TRKGIMKEGE VDLELRLGHD PYRYN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6183635e-31JX618363.1 Gossypium hirsutum clone NBRI_GE63805 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453938.11e-127PREDICTED: transcriptional regulator TAC1
TrEMBLA0A2P5SHI51e-129A0A2P5SHI5_GOSBA; Uncharacterized protein
STRINGGorai.011G172000.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-16C2H2 family protein