PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1681
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 405aa    MW: 43133.3 Da    PI: 8.2327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1681genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.9e-114468327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  ++C +++rtG+C yG++C+F+H++
  Gh_D10G1681 44 KANCIYYLRTGFCGYGSKCRFNHPR 68
                 579********************96 PP
2zf-CCCH35.31.9e-1190114327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++r GtCk+G++Ck++H++
  Gh_D10G1681  90 QPVCQYYMRKGTCKFGSSCKYHHPK 114
                  689********************96 PP
3zf-CCCH36.77.2e-12135159226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C++f +tG+Ck+G++CkF+H+
  Gh_D10G1681 135 GEKECSYFVKTGQCKFGATCKFHHP 159
                  7899********************9 PP
4zf-CCCH36.96.3e-12229255127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++++t  CkyG++Ck++H+p
  Gh_D10G1681 229 PGQPECQYYMKTRNCKYGSSCKYHHPP 255
                  5789*********************97 PP
5zf-CCCH33.28.6e-11277301327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C ++++ G Ck+G  CkF H++
  Gh_D10G1681 277 APPCIHYSQHGVCKFGVACKFDHPM 301
                  689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-44168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3244169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-74370IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-94468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.15587115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-690114IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-990114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-592113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812133161IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6133160IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4139158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497228256IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5228255IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9230255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5232256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4234255IPR000571Zinc finger, CCCH-type
SMARTSM003560.024274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821275302IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8277301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5278303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MERDPESDPQ PEWAAPGPET GLEEPVWRLG LGGESESYPE RPNKANCIYY LRTGFCGYGS  60
KCRFNHPRDR TGVMGAARGD VGEYPERVGQ PVCQYYMRKG TCKFGSSCKY HHPKQGGDSV  120
SPVPLNYLGY PLRPGEKECS YFVKTGQCKF GATCKFHHPV PPAVEVPAPS PTSQAAVSVG  180
TQPAVGSSSM FGVTPLSPSA PAYTRSYQPT PSSVVPSSSI QERSFPERPG QPECQYYMKT  240
RNCKYGSSCK YHHPPEVIAP KVDVILNPLG LPICPGAPPC IHYSQHGVCK FGVACKFDHP  300
MGTLSFSPSA SSLTDMPVAP YPIGSTGGTL APSSSSSDLR PEQLSRSNKE SAPPIMSSSV  360
SASSESVGSI FSKGGLVHHS SAQQSSQSSF GSGNNSSTTK AQASS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613872.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
RefseqXP_017613877.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
SwissprotQ84W911e-120C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0B0N7N30.0A0A0B0N7N3_GOSAR; Uncharacterized protein
STRINGGorai.002G027000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.13e-86zinc finger nuclease 3