PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1726
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 255aa    MW: 28900.6 Da    PI: 8.6293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1726genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2090138355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  Gh_D10G1726  90 YRGIRRRP-WGKWAAEIRDPH----KgVRIWLGTYNTAEEAARAYDEAAKRIRG 138
                  9*******.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.23689146IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2389147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-3289147IPR001471AP2/ERF domain
SMARTSM003807.3E-3789152IPR001471AP2/ERF domain
CDDcd000182.49E-3389148No hitNo description
PfamPF008471.9E-1490138IPR001471AP2/ERF domain
PRINTSPR003671.8E-1190101IPR001471AP2/ERF domain
PRINTSPR003671.8E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MCGGAIISDF IAVKRGRKLT AEDLWSELDT FSDLLGLDYG NGKDPFTQFD NTKAGSKAKN  60
LEKVTNESTQ KTSRGREKEG KTQRTRKNIY RGIRRRPWGK WAAEIRDPHK GVRIWLGTYN  120
TAEEAARAYD EAAKRIRGDK AKLNFPQTPR LTQPPAKKRC MMAPELTPPS SETKSPPTPQ  180
PFMGFGYENG VYRPSEAMES EMELKEQISS LESFLGLEPD EMTTELSGSA EPESVNLWML  240
DHLVTHHQQQ PQLFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21901471573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.81280.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7793380.0AY779338.1 Gossypium hirsutum AP2/EREBP transcription factor ERF-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455978.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLQ5U8L60.0Q5U8L6_GOSHI; AP2/EREBP transcription factor ERF-2
STRINGGorai.011G193600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-53ethylene-responsive element binding protein