PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1743

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 199aa MW: 21630.2 Da PI: 9.9993

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1743	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.3e-05	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H Gh_D10G1743 49 FECQYCHRGFPNSQALGGHQNAH 71 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.45E-6	45	76	No hit	No description
Pfam	PF13912	4.1E-6	48	73	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.489	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSKAAISMSR RSASENNGAG DETGRNNQSS KLKLFGFPVA ATPCDNRRFE CQYCHRGFPN 60 SQALGGHQNA HKRERQEKPA SSFTAHHHQR FLTTGHVITA HSFRSRPSLY ARSGFTNLSP 120 SDEHAVVFRG PSPPCTPIIL RGPRSLHVVG VQPSEGPLLV VQIEVDVGST LDSLVAADVN 180 EEGEHLGAKR TKNEPKSGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453498.1	1e-128	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A0D2TAK2	1e-138	A0A0D2TAK2_GOSRA; Uncharacterized protein
STRING	Gorai.011G195500.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24706	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	4e-14	C2H2 family protein