PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1862

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 361aa MW: 39242.8 Da PI: 5.8988

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1862	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9.2e-11	162	214	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + Gh_D10G1862 162 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 214 9****************************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-17	158	222	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	160	223	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-11	162	213	No hit	No description
Pfam	PF00170	2.7E-9	162	211	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-11	162	216	No hit	No description
CDD	cd14703	1.75E-24	163	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MQDPPSLKPN PDPPIPSNAS STTPSFPNPT TFRGSYHRRA QSEVQFRIPD DLDLVSDPFE 60 GMGSEDDLFC SYMDIEKLGG SSKGAEEGGG ATGSSTAGSA HNPKGDEISG GSAGMGEKTN 120 EGGKGRHRYS NSVDGCSLME SIEAKKAMAP DKLAELWTID PKRAKRIIAN RQSAARSKER 180 KARYISELER KVQTLQTEAT TLSAQLTLFQ RDTTGLTTEN TELKLRLQAM EQQAQLRDAL 240 NEALKKEVER LKMATGEMST PTDNFNLGMH HIPFTQSSFF PPQPRQVETQ NMQMPPFHPL 300 QSNMLASNQS MVAASGPHAF ADMMQQDPLG RLQGLDISSR DSHLVKSEGP SISAGESSGT 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MQDPPSLKPN PDPPIPSNAS STTPSFPNPT TFRGSYHRRA QSEVQFRIPD DLDLVSDPFE  60
GMGSEDDLFC SYMDIEKLGG SSKGAEEGGG ATGSSTAGSA HNPKGDEISG GSAGMGEKTN  120
EGGKGRHRYS NSVDGCSLME SIEAKKAMAP DKLAELWTID PKRAKRIIAN RQSAARSKER  180
KARYISELER KVQTLQTEAT TLSAQLTLFQ RDTTGLTTEN TELKLRLQAM EQQAQLRDAL  240
NEALKKEVER LKMATGEMST PTDNFNLGMH HIPFTQSSFF PPQPRQVETQ NMQMPPFHPL  300
QSNMLASNQS MVAASGPHAF ADMMQQDPLG RLQGLDISSR DSHLVKSEGP SISAGESSGT  360
L

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700950.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-118	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U8KEP5	0.0	A0A1U8KEP5_GOSHI; transcription factor RF2b
STRING	EOY20125	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-116	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]