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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D10G2122 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | NF-YB | ||||||||
| Protein Properties | Length: 191aa MW: 21004.8 Da PI: 8.6836 | ||||||||
| Description | NF-YB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YB | 175.1 | 7e-55 | 41 | 137 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
vreq+r+lPian+srimk +lP+n+ki+kdaketvqe vsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yreleg+
Gh_D10G2122 41 VREQERYLPIANISRIMKTALPTNGKIAKDAKETVQESVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKIYLARYRELEGDA 137
59********************************************************************************************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 2.5E-52 | 37 | 140 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 2.64E-38 | 44 | 139 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 8.0E-27 | 47 | 111 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| PRINTS | PR00615 | 2.7E-20 | 75 | 93 | No hit | No description |
| PRINTS | PR00615 | 2.7E-20 | 94 | 112 | No hit | No description |
| PRINTS | PR00615 | 2.7E-20 | 113 | 131 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 191 aa Download sequence Send to blast |
MHFGDLRSFK DMTDGMARGP TSPAGGSHES GGEQCSSHST VREQERYLPI ANISRIMKTA 60 LPTNGKIAKD AKETVQESVS EFISFITSEA SDKCQKEKRK TINGDDLLWA MATLGFEDYI 120 EPLKIYLARY RELEGDAKGS VRGEVPLKRD AVRVLSVPNP QGDAKGSVRG EVPLKRDAVR 180 VLSVPNPQVK Q |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1n1j_A | 3e-46 | 40 | 132 | 1 | 93 | NF-YB |
| 4awl_B | 3e-46 | 40 | 132 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 3e-46 | 40 | 132 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4g91_B | 3e-46 | 41 | 132 | 1 | 92 | Transcription factor HapC (Eurofung) |
| 4g92_B | 3e-46 | 41 | 132 | 1 | 92 | Transcription factor HapC (Eurofung) |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ghi.4047 | 0.0 | boll| ovule| stem | ||||
| Expression -- Microarray ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | ID | E-value | ||||
| GEO | 78337072 | 0.0 | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}. | |||||
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. | |||||
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016717863.1 | 1e-118 | PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
| Swissprot | Q8VYK4 | 2e-67 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
| Swissprot | Q9SLG0 | 7e-68 | NFYB1_ARATH; Nuclear transcription factor Y subunit B-1 | ||||
| TrEMBL | A0A1U8LWT1 | 1e-117 | A0A1U8LWT1_GOSHI; nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
| STRING | Gorai.011G241600.1 | 1e-111 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1480 | 27 | 94 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G38880.3 | 2e-70 | nuclear factor Y, subunit B1 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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