PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2304
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 206aa    MW: 23338.4 Da    PI: 7.3829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2304genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-056183123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H+++H
  Gh_D10G2304 61 YSCSFCNREFRSAQALGGHMNVH 83
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-65888No hitNo description
Gene3DG3DSA:3.30.160.607.0E-45986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-66184IPR007087Zinc finger, C2H2
SMARTSM003550.00286183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5526188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKQGDEQCWM WMMKKRPSSS QLLRSHFEVS MECLSDTWEE QAFAEDAARC LRGCIWPPRS  60
YSCSFCNREF RSAQALGGHM NVHRRDRAKL KQSVNDHHQY PNNEEAASKS KPPVDEAACT  120
LDHSIDYSTA TKRAFNDVET SLSVGLSSVL FQNRPAVTCN KEAANNKRPK VAVSTLQCSP  180
LQWQVLELKP ASSMEDLDLE LRLGVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-135683229superman protein
2l1o_A6e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391RRDRAKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717069.11e-154PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A1U8LV091e-153A0A1U8LV09_GOSHI; probable transcriptional regulator RABBIT EARS
TrEMBLA0A2P5Q3B61e-153A0A2P5Q3B6_GOSBA; Uncharacterized protein
STRINGGorai.011G268100.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.14e-29C2H2 family protein