PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2317
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 351aa    MW: 40687.8 Da    PI: 5.9655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2317genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.41.7e-46171461127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                  lppG+rF+P+deelv++yL++k++g +l+  + i+e+++y ++P++L +     + ++ ekewyfF++r++ky++g+r+ r++ +gyWkatg dkev+
  Gh_D10G2317  17 LPPGYRFKPRDEELVNYYLRPKISGLPLPP-NRIREANLYGHDPETLTAmnnytSSNEVEKEWYFFTPRERKYTNGSRPARKAGKGYWKATGADKEVI 113
                  79*************************999.77**************84355443333566************************************* PP

          NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                    kg+++g+kktLvfy+g+ p+g kt+W+mhey 
  Gh_D10G2317 114 L-KGKKIGCKKTLVFYEGKPPRGFKTNWTMHEYV 146
                  *.9999***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-5316173IPR003441NAC domain
PROSITE profilePS5100551.96917174IPR003441NAC domain
PfamPF023655.2E-2618146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MLKKQKEEEE EEYFRLLPPG YRFKPRDEEL VNYYLRPKIS GLPLPPNRIR EANLYGHDPE  60
TLTAMNNYTS SNEVEKEWYF FTPRERKYTN GSRPARKAGK GYWKATGADK EVILKGKKIG  120
CKKTLVFYEG KPPRGFKTNW TMHEYVSSEA PVRVRHGKED MKLDNWVLCR LYKNRREAKQ  180
KHRIPQEENG LECQEKVEPH KMAEPVSEPI NMVAPPVYDQ YEQREVQPFN MNIGQDTNRF  240
PELDNPMPVS DEYGNYYMFD NNPTHGGGFQ QVPNYDDFVT NAAAAAALDN QFQSMGNAGF  300
NLPPQPLQFQ PHWPAPPSPP QQFLGANTGF DFSVDEYLLD PEFGMPPPEF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4751773171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472540.0KC847254.1 Gossypium hirsutum NAC domain protein NAC77 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA2YMR02e-51NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A0D2UYK10.0A0A0D2UYK1_GOSRA; Uncharacterized protein
STRINGGorai.011G269400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17827310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-53NAC domain containing protein 32