PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G2393

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 173aa MW: 19003.6 Da PI: 5.6211

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G2393	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.7	2.4e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la+++ Gh_D10G2393 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKTLQELPLQQRADAVSSLVYEANARIRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 103 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Gh_D10G2393 104 AE 105 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.719	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKT LQELPLQQRA 60 DAVSSLVYEA NARIRDPVYG CVGAISYLQN QVSQLQMQLA VAQAEIVCIQ MQQDPIMVAA 120 NPQMVLGQAD DDDQAFLLQN QCFNFANNNA SSSAYVNIHE SLKRESIFGD IVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454533.1	1e-125	PREDICTED: LOB domain-containing protein 12-like isoform X2
Refseq	XP_016719276.1	1e-125	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-73	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D2UZ75	1e-124	A0A0D2UZ75_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LXG9	1e-124	A0A1U8LXG9_GOSHI; LOB domain-containing protein 12-like
TrEMBL	A0A2P5QGZ1	1e-124	A0A2P5QGZ1_GOSBA; Uncharacterized protein
STRING	Gorai.011G290800.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-74	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]