PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G2397

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 316aa MW: 35652.8 Da PI: 8.5903

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G2397	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.7e-32	71	124	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR Gh_D10G2397 71 PRLRWTPDLHLRFVHAVEKLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRG 124 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-30	67	124	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.285	67	127	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-15	68	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-23	71	125	IPR006447	Myb domain, plants
Pfam	PF00249	6.1E-10	72	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MASDDTFEKN RNNNRDLADE EEEEEEEEED RNKINYKTGN DGESSSNSSV EETGKKSTTG 60 SVRPYNRSKT PRLRWTPDLH LRFVHAVEKL GGQDRATPKL VLQLMNIKGL SIAHVKSHLQ 120 MYRGKKIDDP NQVIQKKEIV FQNGDHHHHI HKLSQLPMRQ SFNNQSPSSA FRYGDVISWR 180 GNNNKNVLDM TSKGLYCSVA KRLFSSCNNY NSLSFSSQRP AMGTNCTPLK RKMISSMVSN 240 IEDRLDLDLS LKVTTVAGEF DEKGSLDLDD SGGLSLSLAS SSSFSKLCRL NKEVKYGDGN 300 RKQEVRTMAN TLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	72	123	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	72	123	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	72	123	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	72	123	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016719183.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A1U8M0K2	0.0	A0A1U8M0K2_GOSHI; putative Myb family transcription factor At1g14600
STRING	Gorai.011G291200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-50	G2-like family protein