PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2406
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 238aa    MW: 26362.1 Da    PI: 8.678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2406genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-1464110354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+E+rRRdriNs +  Lr+l+Pk+      K++Ka+ L  A+e +k+L
  Gh_D10G2406  64 KSHSEAEKRRRDRINSQLTALRKLIPKS-----NKMDKAALLGSAIEQVKDL 110
                  79*************************7.....5*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.55561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1464115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1564113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-1164113No hitNo description
PfamPF000101.2E-1164110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.44E-5142208No hitNo description
Gene3DG3DSA:3.30.70.2602.8E-5142203No hitNo description
CDDcd048731.79E-7145181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MENCYPFSLL EPPKCDGCNA AAISNEPPFI VPWPMEPLFS ASSSVRCHGF TSPEIPDKAT  60
VASKSHSEAE KRRRDRINSQ LTALRKLIPK SNKMDKAALL GSAIEQVKDL KRKATEIGKA  120
FAIPSETDEV SVDYNVPEDK TFIKVSICCD DRPEVFSELI RVLKGLRLSI VEAEISSVGG  180
RTKSNLILCN ESDNREGVSS NLKQSLNVVV TKINALSSDE SKSNYRIRSK RQRLFLSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.13260.0boll| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719163.11e-173PREDICTED: transcription factor bHLH51-like
SwissprotQ9XEF04e-51BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A1U8M0I21e-172A0A1U8M0I2_GOSHI; transcription factor bHLH51-like
STRINGGorai.011G292100.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]