PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2437
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 162aa    MW: 18827 Da    PI: 8.8023
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2437genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR39.21.4e-1272111241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   +k+Cn ++s+ lk+YCeCfaag +C++ C C++C Nk +
  Gh_D10G2437  72 ACKHCNFRRSRRLKLYCECFAAGIYCKDYCACDNCLNKPD 111
                  589**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-871112IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163414.82972162IPR005172CRC domain
PfamPF036388.7E-974109IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDFVYQKIWR ILRKCNVFTS SESLMNNLLT GLTNYPNPKI AQKGRGKFHI TFLAVGFIEF  60
RNRKAFPDET EACKHCNFRR SRRLKLYCEC FAAGIYCKDY CACDNCLNKP DYEDIVLDIR  120
HQIELRNPLA FAPPIVNPPN DSPNVTVIIS SIILHLFPFK FV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.51407e-74boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480682.12e-76PREDICTED: uncharacterized protein LOC105795543 isoform X1
TrEMBLA0A2P5S5T12e-76A0A2P5S5T1_GOSBA; Uncharacterized protein
STRINGcassava4.1_026451m2e-30(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3557422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-26TESMIN/TSO1-like CXC 2