PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G2512

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 360aa MW: 40922.1 Da PI: 4.9302

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G2512	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.4	9.4e-43	13	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppG+rF+P+d+e++++yL++k+ g +l+ + ikev +y+++P++L + ++ +e+yfF++rd+kya+g+r+ r + +gyWkatg dk +++ Gh_D10G2512 13 PPGYRFKPRDDEIINFYLRPKIFGLPLPP-NRIKEVLLYNYDPQTLTAmsnnaLSNGVGNEYYFFTPRDRKYANGSRPARNAGNGYWKATGADKLICR 109 9***********************999.77**********8434443222245699******************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 kg+++glkk+Lvfy+g+ pkg+kt+W+mhey l Gh_D10G2512 110 -KGKKIGLKKSLVFYQGKPPKGVKTNWLMHEYVL 142 .9999*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-52	11	168	IPR003441	NAC domain
PROSITE profile	PS51005	50.852	12	169	IPR003441	NAC domain
Pfam	PF02365	6.9E-23	13	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEEKDEACLR SIPPGYRFKP RDDEIINFYL RPKIFGLPLP PNRIKEVLLY NYDPQTLTAM 60 SNNALSNGVG NEYYFFTPRD RKYANGSRPA RNAGNGYWKA TGADKLICRK GKKIGLKKSL 120 VFYQGKPPKG VKTNWLMHEY VLTDAPIRKR LGNEDMRLDD WVLCRVYKNP RVKKLEHETL 180 EDGNQEEADT ATTVAYDGAQ MVQQEGHQVE CEAEADRSAI PPYNGIQMVE NGIAFAPLYE 240 PINTSSQMLE HGIAPLYEPI NTSSQMLENG IAFAPLYEPI NVQMPQGTSS WFPEQVYSTP 300 YFNQYGDYTF EHPTLEGFNM PDCGVSDPAL FQINMQQHFS SDFDLDQLNQ DPHSGLPPPL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEEKDEACLR SIPPGYRFKP RDDEIINFYL RPKIFGLPLP PNRIKEVLLY NYDPQTLTAM  60
SNNALSNGVG NEYYFFTPRD RKYANGSRPA RNAGNGYWKA TGADKLICRK GKKIGLKKSL  120
VFYQGKPPKG VKTNWLMHEY VLTDAPIRKR LGNEDMRLDD WVLCRVYKNP RVKKLEHETL  180
EDGNQEEADT ATTVAYDGAQ MVQQEGHQVE CEAEADRSAI PPYNGIQMVE NGIAFAPLYE  240
PINTSSQMLE HGIAPLYEPI NTSSQMLENG IAFAPLYEPI NVQMPQGTSS WFPEQVYSTP  300
YFNQYGDYTF EHPTLEGFNM PDCGVSDPAL FQINMQQHFS SDFDLDQLNQ DPHSGLPPPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	1	169	6	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	1	169	6	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	1	169	6	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	1	169	6	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	1	169	9	168	NAC domain-containing protein 19
3swm_B	2e-50	1	169	9	168	NAC domain-containing protein 19
3swm_C	2e-50	1	169	9	168	NAC domain-containing protein 19
3swm_D	2e-50	1	169	9	168	NAC domain-containing protein 19
3swp_A	2e-50	1	169	9	168	NAC domain-containing protein 19
3swp_B	2e-50	1	169	9	168	NAC domain-containing protein 19
3swp_C	2e-50	1	169	9	168	NAC domain-containing protein 19
3swp_D	2e-50	1	169	9	168	NAC domain-containing protein 19
4dul_A	1e-50	1	169	6	165	NAC domain-containing protein 19
4dul_B	1e-50	1	169	6	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847249	0.0	KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604773.1	2e-88	PREDICTED: uncharacterized protein LOC108451615
TrEMBL	A0A0D2UYM4	0.0	A0A0D2UYM4_GOSRA; Uncharacterized protein
STRING	Gorai.011G271300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28853	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-53	NAC-like, activated by AP3/PI