PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0061
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 328aa    MW: 37599.6 Da    PI: 9.0775
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0061genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.2e-401072481131
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg.. 88 
                  aa k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qakp+i +l+++        + s++  +++e++++s+  + ++  
  Gh_D11G0061 107 AASKTDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLVQAKPEITKLMNNsnnsfgfaK-SPS--STSETEVVSGIDKAAAid 201
                  5889*************************************************************666554431.111..122233333332222255 PP

          TCP  89 ....kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                      k  +s++++k+++++++s++ la++ r kar+ra+ rt+ek++
  Gh_D11G0061 202 gnipKGTPSKKEKKERRQRKTSFRPLARDMRVKARERAKARTKEKNM 248
                  66667777777777777777789********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-40109248IPR005333Transcription factor, TCP
PROSITE profilePS5136931.407110168IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.009229246IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MFPSNSNGNN NDPITYLDHS ILPLSFFYSP SSPNYNQCEL LQLDEYDYDV LWNQQQHFDD  60
DDDQFLHQTT LLTDNSVSET IVNLPDCRHN NTTTDIHQQP MPRKRPAASK TDRHSKINTA  120
NGPRDRRMRL SLDVAREFFG LQDMLGYDKA SRTVEWLLVQ AKPEITKLMN NSNNSFGFAK  180
SPSSTSETEV VSGIDKAAAI DGNIPKGTPS KKEKKERRQR KTSFRPLARD MRVKARERAK  240
ARTKEKNMSL RLNNETRDND PNRFGSSWSS TWTKQPGIQN HHNNNNNTVF QADNINIHGD  300
RMIWSLNCLQ NTGLINQEAQ SFGKPREA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6229380.0JX622938.1 Gossypium hirsutum clone NBRI_GE69896 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684619.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1U8J8T60.0A0A1U8J8T6_GOSHI; transcription factor CYCLOIDEA-like
STRINGGorai.007G007500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.26e-30TCP family protein