PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0086
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 237aa    MW: 25320.2 Da    PI: 4.4838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0086genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-1671119255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  Gh_D11G0086  71 VYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 119
                  59***6..668*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-2871128IPR001471AP2/ERF domain
PfamPF008473.0E-1071119IPR001471AP2/ERF domain
PROSITE profilePS5103220.5671127IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1871128IPR016177DNA-binding domain
SMARTSM003809.3E-2971135IPR001471AP2/ERF domain
CDDcd000181.51E-2872128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MIQISAILHT NMTESDSSST NVPPKDQPPP PTVPIPDAPP QEQSPKPSST PLISSKEGVS  60
GNSTSRKLPA VYRGVRSRSG KWVSEIREPR KTTRIWLGTY PTPEMAATAY DVAALALKGP  120
DAELNFPDMV HSYPKVGSTS ATDIRAAAAS AAASRLLPKA VTNTGSSSKN EDTTSTTAME  180
ITCSGQEFID EEELLNFPNL MVDMAGGMLV SPPNWINSPP SDDSPDNSDV DTLWTYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12721331575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.14310.0boll| leaf| ovule| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2243820.0DQ224382.1 Gossypium hirsutum DRE-binding protein 3a (DBP3a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686544.11e-171PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9CAN95e-48ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A1U8JE651e-169A0A1U8JE65_GOSHI; ethylene-responsive transcription factor ERF027-like
STRINGGorai.007G010200.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-34ERF family protein