PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0400
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24259.7 Da    PI: 10.6017
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0400genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF923e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien +nrqvtfskRrng+lKKA+ELS+LCdaeva++ifss+gk+y ++s
  Gh_D11G0400  9 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSSGKVYQFAS 59
                 79***********************************************86 PP
2K-box60.85.4e-218517213100
        K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + e ++ e++ Lk+ i++ +  ++hl Ged+  L +++L+qLe+qL+ +++++Rs+K +++ ++   l+++ k+lqeen +L+k+l+e
  Gh_D11G0400  85 TREFWRSEIDELKRSINTSEARLKHLSGEDILALGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKQLQEENSRLHKRLKE 172
                  5689********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.109161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.60E-39270No hitNo description
SuperFamilySSF554552.49E-32276IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2085170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.3786176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKVELKR IENPTNRQVT FSKRRNGLLK KAFELSILCD AEVALLIFSS SGKVYQFASH  60
DMDRTVAKYR REVGLPDSSN PQFRTREFWR SEIDELKRSI NTSEARLKHL SGEDILALGM  120
RDLKQLERQL KIGVERVRSR KRRIVSDHAT LLKRRHKQLQ EENSRLHKRL KELQDGNISS  180
GLVGENACTM FHQSIVHEED FHNETGLPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-25169169MEF2 CHIMERA
6byy_B3e-25169169MEF2 CHIMERA
6byy_C3e-25169169MEF2 CHIMERA
6byy_D3e-25169169MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364520.0HM236452.1 Gossypium hirsutum MADS36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695611.11e-152PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
TrEMBLA0A1U8JZ971e-151A0A1U8JZ97_GOSHI; truncated transcription factor CAULIFLOWER A-like isoform X2
STRINGGorai.007G043400.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.12e-48MIKC_MADS family protein