PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0411
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 333aa    MW: 37376 Da    PI: 8.2114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0411genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10168215455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Gh_D11G0411 168 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 215
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.35E-11162219No hitNo description
SuperFamilySSF474591.83E-17162231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.993164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-7168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASYSFQSHP FLLDSIFLPN TSTTKVSGFV EESNIINPNC FPQFYQDSPV GSMLHQSNCL  60
DHSSNEPSTV TKKQSTDDDS STAVDKLESG EQVTQKKRTR NGTTSNSAQF KGAKEGKTKK  120
QKKCNDGLKN EKKGCNSKAD KKDQEKATEQ PPKGYIHVRA RRGQATDSHS LAERVRREKI  180
SERMKTLQRL VPGCDKVTGK ALMLDEIINY VQSLQNQVEF LSMKLASLSP MFYDFGVDLE  240
TLMIRPERAS STETSPLPMP CPQQCNPIQT TIAPSHINYP LLDVSTALFL QQGLRPNLFS  300
HSQDNGSVLW DVEDQRQKIF NSSQLNDNLC FFH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.13120.0boll| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695600.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A1U8JZE10.0A0A1U8JZE1_GOSHI; transcription factor bHLH137-like
STRINGGorai.007G044400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-62bHLH family protein